Intermolecular interactions underlie protein/peptide phase separation irrespective of sequence and structure at crowded milieu

Author:

Poudyal Manisha,Patel Komal,Gadhe Laxmikant,Sawner Ajay Singh,Kadu Pradeep,Datta Debalina,Mukherjee Semanti,Ray Soumik,Navalkar Ambuja,Maiti Siddhartha,Chatterjee Debdeep,Devi Jyoti,Bera Riya,Gahlot Nitisha,Joseph JenniferORCID,Padinhateeri RanjithORCID,Maji Samir K.ORCID

Abstract

AbstractLiquid-liquid phase separation (LLPS) has emerged as a crucial biological phenomenon underlying the sequestration of macromolecules (such as proteins and nucleic acids) into membraneless organelles in cells. Unstructured and intrinsically disordered domains are known to facilitate multivalent interactions driving protein LLPS. We hypothesized that LLPS could be an intrinsic property of proteins/polypeptides but with distinct phase regimes irrespective of their sequence and structure. To examine this, we studied many (a total of 23) proteins/polypeptides with different structures and sequences for LLPS study in the presence and absence of molecular crowder, polyethylene glycol (PEG-8000). We showed that all proteins and even highly charged polypeptides (under study) can undergo liquid condensate formation, however with different phase regimes and intermolecular interactions. We further demonstrated that electrostatic, hydrophobic, and H-bonding or a combination of such intermolecular interactions plays a crucial role in individual protein/peptide LLPS.

Funder

Department of Science and Technology, Ministry of Science and Technology

Department of Biotechnology, Ministry of Science and Technology

DST | Science and Engineering Research Board

Publisher

Springer Science and Business Media LLC

Subject

General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry,Multidisciplinary

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