Accurate estimation of cell-type composition from gene expression data
Author:
Publisher
Springer Science and Business Media LLC
Subject
General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry
Link
http://www.nature.com/articles/s41467-019-10802-z.pdf
Reference32 articles.
1. Repsilber, D. et al. Biomarker discovery in heterogeneous tissue samples-taking the in-silico deconfounding approach. BMC Bioinforma. 11, 27 (2010).
2. Avila Cobos, F., Vandesompele, J., Mestdagh, P. & De Preter, K. Computational deconvolution of transcriptomics data from mixed cell populations. Bioinformatics 34, 1969–1979 (2018).
3. Shen-Orr, S. S. & Gaujoux, R. Computational deconvolution: extracting cell type-specific information from heterogeneous samples. Curr. Opin. Immunol. 25, 571–578 (2013).
4. Abbas, A. R., Wolslegel, K., Seshasayee, D., Modrusan, Z. & Clark, H. F. Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus. PLoS ONE 4, e6098 (2009).
5. Li, B. et al. Comprehensive analyses of tumor immunity: implications for cancer immunotherapy. Genome Biol. 17, 174 (2016).
Cited by 147 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. STIE: Single-cell level deconvolution, convolution, and clustering in in situ capturing-based spatial transcriptomics;Nature Communications;2024-08-30
2. STdGCN: spatial transcriptomic cell-type deconvolution using graph convolutional networks;Genome Biology;2024-08-05
3. ReCIDE: robust estimation of cell type proportions by integrating single-reference-based deconvolutions;Briefings in Bioinformatics;2024-07-25
4. scSemiProfiler: Advancing large-scale single-cell studies through semi-profiling with deep generative models and active learning;Nature Communications;2024-07-16
5. Unravelling the progression of the zebrafish primary body axis with reconstructed spatiotemporal transcriptomics;2024-07-03
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3