De novo assembly of haplotype-resolved genomes with trio binning-Reference-Cited by-同舟云学术

De novo assembly of haplotype-resolved genomes with trio binning

Published:2018-10-22 Issue:12 Volume:36 Page:1174-1182
ISSN:1087-0156
Container-title:Nature Biotechnology
language:en
Short-container-title:Nat Biotechnol

Author:

Koren Sergey,Rhie Arang^ORCID,Walenz Brian P,Dilthey Alexander T^ORCID,Bickhart Derek M^ORCID,Kingan Sarah B^ORCID,Hiendleder Stefan^ORCID,Williams John L^ORCID,Smith Timothy P L,Phillippy Adam M

Publisher

Springer Science and Business Media LLC

Subject

Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology

Link

http://www.nature.com/articles/nbt.4277.pdf

Reference56 articles.

1. Phillippy, A.M. New advances in sequence assembly. Genome Res. 27, xi–xiii (2017).

2. Koren, S. et al. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biol. 14, R101 (2013).

3. Korlach, J. et al. De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads. Gigascience 6, 1–16 (2017).

4. Myers, E.W. et al. A whole-genome assembly of Drosophila. Science 287, 2196–2204 (2000).

5. Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520–562 (2002).

Cited by 387 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Advancing chromosomal-scale, haplotype-resolved genome assembly: beading with Hi-C data;Advanced Biotechnology;2024-09-03

2. The Probiotic Enterococcus Lactis SF68 as a Potential Food Fermentation Microorganism for Safe Food Production;Journal of Agricultural and Food Chemistry;2024-08-05

3. Chromosome-level scaffolding of haplotype-resolved assemblies using Hi-C data without reference genomes;Nature Plants;2024-08-05

4. Genome-wide analysis with additive and epistasis effects reveals growth-related loci and candidate genes in hybrid Argopecten scallops;Aquaculture;2024-08

5. AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline;Frontiers in Genetics;2024-07-26