Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan-Reference-Cited by-同舟云学术

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

Published:2010-06-13 Issue:7 Volume:7 Page:528-534
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Plessy Charles,Bertin Nicolas,Takahashi Hazuki,Simone Roberto,Salimullah Md,Lassmann Timo,Vitezic Morana,Severin Jessica,Olivarius Signe,Lazarevic Dejan,Hornig Nadine,Orlando Valerio,Bell Ian,Gao Hui,Dumais Jacqueline,Kapranov Philipp,Wang Huaien,Davis Carrie A,Gingeras Thomas R,Kawai Jun,Daub Carsten O,Hayashizaki Yoshihide,Gustincich Stefano,Carninci Piero

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

http://www.nature.com/articles/nmeth.1470.pdf

Reference36 articles.

1. Shiraki, T. et al. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc. Natl. Acad. Sci. USA 100, 15776–15781 (2003).

2. Kodzius, R. et al. CAGE: cap analysis of gene expression. Nat. Methods 3, 211–222 (2006).

3. Carninci, P. Cap-Analysis Gene Expression (CAGE): Genome-Scale Promoter Identification and Association with Expression Profile and Regulatory Networks (Pan Stanford Publishing, Singapore, 2009).

4. Carninci, P. et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. 38, 626–635 (2006).

5. Suzuki, H. et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat. Genet. 41, 553–562 (2009).

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