ART-DeCo: easy tool for detection and characterization of cross-contamination of DNA samples in diagnostic next-generation sequencing analysis-Reference-Cited by-同舟云学术

ART-DeCo: easy tool for detection and characterization of cross-contamination of DNA samples in diagnostic next-generation sequencing analysis

Published:2019-01-25 Issue:5 Volume:27 Page:792-800
ISSN:1018-4813
Container-title:European Journal of Human Genetics
language:en
Short-container-title:Eur J Hum Genet

Author:

Fiévet Alice^ORCID,Bernard Virginie,Tenreiro Henrique,Dehainault Catherine,Girard Elodie,Deshaies Vivien,Hupe Philippe,Delattre Olivier,Stern Marc-Henri^ORCID,Stoppa-Lyonnet Dominique,Golmard Lisa,Houdayer Claude

Funder

Agence Nationale de la Recherche

Publisher

Springer Science and Business Media LLC

Subject

Genetics (clinical),Genetics

Link

http://www.nature.com/articles/s41431-018-0317-x.pdf

Reference14 articles.

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2. Meacham F, Boffelli D, Dhahbi J, Martin DI, Singer M, Pachter L, et al. Identification and correction of systematic error in high-throughput sequence data. BMC Bioinformatics. 2011;12:451.

3. Kinde I, Wu J, Papadopoulos N, Kinzler KW, Vogelstein B. Detection and quantification of rare mutations with massively parallel sequencing. Proc Natl Acad Sci USA. 2011;108:9530–5.

4. Costello M, Fleharty M, Abreu J, Farjoun Y, Ferriera S, Holmes L, et al. Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms. BMC Genomics. 2018;19:332.

5. Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal. 2011;17:10–2.

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