Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence

Author:

Guérin Nina,Ciccarella MartaORCID,Flamant Elisa,Frémont PaulORCID,Mangenot Sophie,Istace Benjamin,Noel BenjaminORCID,Belser CarolineORCID,Bertrand Laurie,Labadie KarineORCID,Cruaud Corinne,Romac SarahORCID,Bachy CharlesORCID,Gachenot Martin,Pelletier Eric,Alberti Adriana,Jaillon OlivierORCID,Wincker PatrickORCID,Aury Jean-MarcORCID,Carradec QuentinORCID

Abstract

AbstractThe smallest phytoplankton species are key actors in oceans biogeochemical cycling and their abundance and distribution are affected with global environmental changes. Among them, algae of the Pelagophyceae class encompass coastal species causative of harmful algal blooms while others are cosmopolitan and abundant. The lack of genomic reference in this lineage is a main limitation to study its ecological importance. Here, we analysed Pelagomonas calceolata relative abundance, ecological niche and potential for the adaptation in all oceans using a complete chromosome-scale assembled genome sequence. Our results show that P. calceolata is one of the most abundant eukaryotic species in the oceans with a relative abundance favoured by high temperature, low-light and iron-poor conditions. Climate change projections based on its relative abundance suggest an extension of the P. calceolata habitat toward the poles at the end of this century. Finally, we observed a specific gene repertoire and expression level variations potentially explaining its ecological success in low-iron and low-nitrate environments. Collectively, these findings reveal the ecological importance of P. calceolata and lay the foundation for a global scale analysis of the adaptation and acclimation strategies of this small phytoplankton in a changing environment.

Funder

Agence Nationale de la Recherche

Publisher

Springer Science and Business Media LLC

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,Medicine (miscellaneous)

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