CoLoRd: compressing long reads-Reference-Cited by-同舟云学术

登录注册会员服务联系我们

CoLoRd: compressing long reads

Published:2022-03-28 Issue:4 Volume:19 Page:441-444
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Kokot Marek^ORCID,Gudyś Adam,Li Heng^ORCID,Deorowicz Sebastian^ORCID

Funder

Narodowe Centrum Nauki

U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

https://www.nature.com/articles/s41592-022-01432-3.pdf

Reference32 articles.

1. Jain, M. et al. Nanopore sequencing and assembly of a human genome with ultra-long reads. Nat. Biotechnol. 36, 338–345 (2018).

2. Stancu, M. C. et al. Mapping and phasing of structural variation in patient genomes using Nanopore sequencing. Nat. Commun. 8, 1326 (2017).

3. Jones, D. C., Ruzzo, W. L., Peng, X. & Katze, M. G. Compression of next-generation sequencing reads aided by highly efficient de novo assembly. Nucleic Acids Res. 40, e171 (2012).

4. Bonfield, J. K. & Mahoney, M. V. Compression of FASTQ and SAM format sequencing data. PloS ONE 8, e59190 (2013).

5. Roguski, Ł. & Deorowicz, S. DSRC 2: industry-oriented compression of FASTQ files. Bioinformatics 30, 2213–2215 (2014).

Cited by 9 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-length prediction mapping;Bioinformatics;2024-05-01

2. The Application of Long-Read Sequencing to Cancer;Cancers;2024-03-25

3. GeneSqueeze: A Novel Lossless, Reference-Free Compression Algorithm for FASTQ/A Files;2024-03-25

4. Lossless Compression of Nanopore Sequencing Raw Signals;Lecture Notes in Computer Science;2024

5. PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering;BMC Bioinformatics;2023-11-30

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号京ICP备18003416号-3