Compression of next-generation sequencing reads aided by highly efficient de novo assembly-Reference-Cited by-同舟云学术

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

Published:2012-08-13 Issue:22 Volume:40 Page:e171-e171
ISSN:1362-4962
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Jones Daniel C.¹,Ruzzo Walter L.¹¹¹,Peng Xinxia¹,Katze Michael G.¹

Affiliation:

1. Department of Computer Science and Engineering, University of Washington, Seattle, WA 98195-2350, 2Department of Genome Sciences, University of Washington, Seattle, WA 98195-5065, 3Fred Hutchinson Cancer Research Center, Seattle, WA 98109 and 4Department of Microbiology, University of Washington, Seattle, WA 98195-7242, USA

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

http://academic.oup.com/nar/article-pdf/40/22/e171/25347126/gks754.pdf

Reference30 articles.

1. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants;Cock;Nucleic Acids Res.,2010

2. The sequence alignment/map format and SAMtools;Li;Bioinformatics,2009

3. G-SQZ: compact encoding of genomic sequence and quality data;Tembe;Bioinformatics,2010

4. Compression of DNA sequence reads in FASTQ format;Deorowicz;Bioinformatics,2011

5. Compressing genomic sequence fragments using SlimGene;Kozanitis;J. Comput. Biol.,2011

Cited by 133 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Genie: the first open-source ISO/IEC encoder for genomic data;Communications Biology;2024-05-09

2. PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering;BMC Bioinformatics;2023-11-30

3. A new efficient referential genome compression technique for FastQ files;Functional & Integrative Genomics;2023-11-11

4. A Pipeline for Constructing Reference Genomes for Large Cohort-Specific Metagenome Compression;Microorganisms;2023-10-14

5. Lossless compression for quality scores of genomic data based on high-throughput sequencing;Sixth International Conference on Computer Information Science and Application Technology (CISAT 2023);2023-10-11