Creating diploid assemblies from Nanopore and Illumina reads with hypo-assembler
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Publisher
Springer Science and Business Media LLC
Link
https://www.nature.com/articles/s41592-023-02142-0.pdf
Reference5 articles.
1. Cheng, H. et al. Haplotype-resolved assembly of diploid genomes without parental data. Nat. Biotechnol. 40, 1332–1335 (2022). This paper presents HiFiAsm, a HiFi-based haplotype-resolved assembler.
2. Koren, S. et al. De novo assembly of haplotype-resolved genomes with trio binning. Nat. Biotechnol. 36, 1174–1182 (2018). This paper presents TrioCanu, a trio-based haplotype-resolved assembler.
3. Ariyaratne, P. N. et al. PE-Assembler: de novo assembler using short paired-end reads. Bioinformatics 27, 167–174 (2011). This paper is a previous use of the idea of solid k-mers.
4. Nurk, S. et al. The complete sequence of a human genome. Science 376, 44–53 (2022). The paper presents CHM13, a complete human reference genome.
5. Jarvis, E. D. et al. Semi-automated assembly of high-quality diploid human reference genomes. Nature 611, 519–531 (2022). This paper presents the incomplete HG002 reference genome used in the evaluation.
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