Orientation Dependence of DNA Blunt-End Stacking Studied by Free-Energy Simulations
Author:
Affiliation:
1. Center of Functional Protein Assemblies and Physics Department, Technical University of Munich, Ernst-Otto-Fischer-Str. 8, 85748 Garching, Germany
Funder
Deutsche Forschungsgemeinschaft
Publisher
American Chemical Society (ACS)
Subject
Materials Chemistry,Surfaces, Coatings and Films,Physical and Theoretical Chemistry
Link
https://pubs.acs.org/doi/pdf/10.1021/acs.jpcb.1c07829
Reference45 articles.
1. Bath, J.; Turberfield, A. J. Nanoscience and Technology: A Collection of Reviews from Nature Journals; World Scientific, 2010; pp 124–133.
2. Stacked–Unstacked Equilibrium at the Nick Site of DNA
3. Single-molecule dissection of stacking forces in DNA
4. Base-Pairing and Base-Stacking Contributions to Double-Stranded DNA Formation
5. Stochastic Binding Process of Blunt-End Stacking of DNA Molecules Observed by Atomic Force Microscopy
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2. Atomistic Picture of Opening–Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations;Journal of Chemical Information and Modeling;2023-04-26
3. Toward Force Fields with Improved Base Stacking Descriptions;Journal of Chemical Theory and Computation;2023-02-16
4. The development of nucleic acids force fields: From an unchallenged past to a competitive future;Biophysical Journal;2022-12
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