Toward Force Fields with Improved Base Stacking Descriptions-Reference-Cited by-同舟云学术

Toward Force Fields with Improved Base Stacking Descriptions

Published:2023-02-16 Issue:5 Volume:19 Page:1529-1536
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Liebl Korbinian¹^ORCID,Zacharias Martin²

Affiliation:

1. Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, United States

2. Physics Department and Center of Protein Assemblies, Technical University of Munich, Garching 85748, Germany

Funder

Deutsche Forschungsgemeinschaft

University of Chicago

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.2c01121

Reference66 articles.

1. Assembling Materials with DNA as the Guide

2. The Physics of DNA Folding: Polymer Models and Phase-Separation

3. How does RNA fold dynamically?

4. Proton magnetic resonance studies of ribose dinucleoside monophosphates in aqueous solution. I. Nature of the base-stacking interaction in adenylyl(3'->5')adenosine

5. Single-molecule derivation of salt dependent base-pair free energies in DNA

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1. Molecular dynamics simulations reveal the parallel stranded d(GGGA)3GGG DNA quadruplex folds via multiple paths from a coil-like ensemble;International Journal of Biological Macromolecules;2024-03

2. The impact of sequence periodicity on DNA mechanics: investigating the origin of A-tract's curvature;Nanoscale;2024

3. Parallel G-quadruplex folds via multiple paths involving G-tract stacking and structuring from coil ensemble;2023-09-09

4. Structural Mapping of the Base Stacks Containing Post-transcriptionally Modified Bases in RNA;The Journal of Physical Chemistry B;2023-06-27

5. Assessing the Current State of Amber Force Field Modifications for DNA─2023 Edition;Journal of Chemical Theory and Computation;2023-06-21