Conformational Search for the Building Block of Proteins Based on the Gradient Gravitational Search Algorithm (ConfGGS) Using Force Fields: CHARMM, AMBER, and OPLS-AA-Reference-Cited by-同舟云学术

Conformational Search for the Building Block of Proteins Based on the Gradient Gravitational Search Algorithm (ConfGGS) Using Force Fields: CHARMM, AMBER, and OPLS-AA

Published:2023-01-10 Issue:2 Volume:63 Page:670-690
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Pradhan Rojalin¹,Panigrahi Sibarama¹²,Sahu Prabhat K.¹^ORCID

Affiliation:

1. Computational Modeling Research Laboratory, School of Chemistry (Autonomous), Sambalpur University, Jyoti Vihar, Burla768019, India

2. Department of Computer Science and Engineering, Sambalpur University Institute of Information Technology, Jyoti Vihar, Burla768019, India

Funder

Science and Engineering Research Board

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.2c01398

Reference79 articles.

1. Advances in protein structure prediction and design

2. The Protein Folding Problem

3. Principles that Govern the Folding of Protein Chains

4. Application of torsion angle molecular dynamics for efficient sampling of protein conformations

5. Conformational search using a molecular dynamics-minimization procedure: Applications to clusters of coulombic charges, Lennard-Jones particles, and waters

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