Performance Evaluation of Ingenious Crow Search Optimization Algorithm for Protein Structure Prediction

Author:

Alshamrani Ahmad M.1ORCID,Saxena Akash2,Shekhawat Shalini3ORCID,Zawbaa Hossam M.4ORCID,Mohamed Ali Wagdy56ORCID

Affiliation:

1. Statistics and Operations Research Department, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia

2. Department of Electrical Engineering, Central University of Haryana, Mahendergarh 123031, Haryana, India

3. Department of Mathematics, Swami Keshvanand Institute of Technology, Management and Gramothan, Jaipur 302017, Rajasthan, India

4. CeADAR Ireland’s Center for Applied AI, Technological University Dublin, D7 EWV4 Dublin, Ireland

5. Operations Research Department, Faculty of Graduate Studies for Statistical Research, Cairo University, Giza 12613, Egypt

6. Applied Science Research Center, Applied Science Private University, Amman 11937, Jordan

Abstract

Protein structure prediction is one of the important aspects while dealing with critical diseases. An early prediction of protein folding helps in clinical diagnosis. In recent years, applications of metaheuristic algorithms have been substantially increased due to the fact that this problem is computationally complex and time-consuming. Metaheuristics are proven to be an adequate tool for dealing with complex problems with higher computational efficiency than conventional tools. The work presented in this paper is the development and testing of the Ingenious Crow Search Algorithm (ICSA). First, the algorithm is tested on standard mathematical functions with known properties. Then, the application of newly developed ICSA is explored on protein structure prediction. The efficacy of this algorithm is tested on a bench of artificial proteins and real proteins of medium length. The comparative analysis of the optimization performance is carried out with some of the leading variants of the crow search algorithm (CSA). The statistical comparison of the results shows the supremacy of the ICSA for almost all protein sequences.

Funder

King Saud University

Publisher

MDPI AG

Subject

Process Chemistry and Technology,Chemical Engineering (miscellaneous),Bioengineering

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