Computing Free Energy of a Large-Scale Allosteric Transition in Adenylate Kinase Using All Atom Explicit Solvent Simulations-Reference-Cited by-同舟云学术

Computing Free Energy of a Large-Scale Allosteric Transition in Adenylate Kinase Using All Atom Explicit Solvent Simulations

Published:2012-01-26 Issue:5 Volume:116 Page:1709-1715
ISSN:1520-6106
Container-title:The Journal of Physical Chemistry B
language:en
Short-container-title:J. Phys. Chem. B

Author:

Potoyan Davit A.¹,Zhuravlev Pavel I.¹,Papoian Garegin A.¹

Affiliation:

1. Institute for Physical Science and Technology, ‡Chemical Physics Program, and §Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, United States

Publisher

American Chemical Society (ACS)

Subject

Materials Chemistry,Surfaces, Coatings and Films,Physical and Theoretical Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/jp209980b

Reference48 articles.

1. A unified model of protein dynamics

2. The Energy Landscapes and Motions of Proteins

3. Functional versus folding landscapes: the same yet different

4. A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

5. Bulk-solvent and hydration-shell fluctuations, similar to - and -fluctuations in glasses, control protein motions and functions

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