X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification-Reference-Cited by-同舟云学术

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X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification

Published:2016-12-19 Issue:2 Volume:16 Page:494-503
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Langella Olivier¹,Valot Benoît²,Balliau Thierry¹,Blein-Nicolas Mélisande¹,Bonhomme Ludovic³,Zivy Michel¹^ORCID

Affiliation:

1. PAPPSO, GQE - Le Moulon, INRA, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, 91190 Gif-sur-Yvette, France

2. UMR 6249 Chrono-Environnement, CNRS, Université de Bourgogne Franche-Comté, 25030 Besançon, France

3. INRA/UBP, UMR 1095, Genetics, Diversity and Ecophysiology of Cereals, F63100 Clermont-Ferrand, France

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.6b00632

Reference36 articles.

1. Probability-based protein identification by searching sequence databases using mass spectrometry data

2. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

3. TANDEM: matching proteins with tandem mass spectra

4. Open Mass Spectrometry Search Algorithm

5. Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

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