Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline-Reference-Cited by-同舟云学术

Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline

Published:2023-01-11 Issue:2 Volume:22 Page:647-655
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Hoopmann Michael R.¹^ORCID,Shteynberg David D.¹,Zelter Alex²^ORCID,Riffle Michael²^ORCID,Lyon Andrew S.³^ORCID,Agard David A.³,Luan Qing⁴,Nolen Brad J.⁴,MacCoss Michael J.⁵^ORCID,Davis Trisha N.²,Moritz Robert L.¹^ORCID

Affiliation:

1. Institute for Systems Biology, Seattle, Washington98109, United States

2. Department of Biochemistry, University of Washington, Seattle, Washington98195, United States

3. Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California94143, United States

4. Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon97403, United States

5. Department of Genome Sciences, University of Washington, Seattle, Washington98195, United States

Funder

Howard Hughes Medical Institute

Division of Biological Infrastructure

NIH Office of the Director

National Heart, Lung, and Blood Institute

Division of Graduate Education

University of California, San Francisco

National Institute of General Medical Sciences

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00670

Reference43 articles.

1. Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

2. Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

3. First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

4. Finding Chimeras: a Bioinformatics Strategy for Identification of Cross-linked Peptides

5. StavroX—A Software for Analyzing Crosslinked Products in Protein Interaction Studies

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