MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics-Reference-Cited by-同舟云学术

MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics

Published:2019-10-07 Issue:11 Volume:18 Page:3876-3884
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Bichmann Leon^ORCID,Nelde Annika,Ghosh Michael,Heumos Lukas,Mohr Christopher,Peltzer Alexander,Kuchenbecker Leon,Sachsenberg Timo,Walz Juliane S.,Stevanović Stefan¹,Rammensee Hans-Georg¹,Kohlbacher Oliver²^ORCID

Affiliation:

1. German Cancer Consortium (DKTK), DKFZ Partner Site, Tübingen 72076, Germany

2. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen 72076, Germany

Funder

Bundesministerium f?r Bildung und Forschung

Deutsche Forschungsgemeinschaft

Medical Informatics Initiative

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.9b00313

Reference73 articles.

1. Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands

2. Towards a systems understanding of MHC class I and MHC class II antigen presentation

3. Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

4. Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity

5. Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

Cited by 39 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Exploring the dynamic landscape of immunopeptidomics: Unravelling posttranslational modifications and navigating bioinformatics terrain;Mass Spectrometry Reviews;2024-08-16

2. Microproteins encoded by noncanonical ORFs are a major source of tumor-specific antigens in a liver cancer patient meta-cohort;Science Advances;2024-07-12

3. Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors Into Peptide Identification;Molecular & Cellular Proteomics;2024-07

4. pXg: Comprehensive Identification of Noncanonical MHC-I–Associated Peptides From De Novo Peptide Sequencing Using RNA-Seq Reads;Molecular & Cellular Proteomics;2024-04

5. MARS an improved de novo peptide candidate selection method for non-canonical antigen target discovery in cancer;Nature Communications;2024-01-22