Quantum Chemical Benchmark Study on 46 RNA Backbone Families Using a Dinucleotide Unit-Reference-Cited by-同舟云学术

Quantum Chemical Benchmark Study on 46 RNA Backbone Families Using a Dinucleotide Unit

Published:2015-09-15 Issue:10 Volume:11 Page:4972-4991
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Kruse Holger¹²,Mladek Arnost¹,Gkionis Konstantinos¹²,Hansen Andreas³,Grimme Stefan³,Sponer Jiri¹²

Affiliation:

1. Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 612 65 Brno, Czech Republic

2. CEITEC—Central European Institute of Technology, Campus Bohunice, Kamenice 5, 625 00 Brno, Czech Republic

3. Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Beringstr. 4, D-53115 Bonn, Germany

Funder

Akademie ved Ceské Republiky

Seventh Framework Programme

Czech Science Foundation

European Regional Development Fund

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.5b00515

Reference154 articles.

1. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

2. Tagging mammalian transcription complexity

3. Raising the estimate of functional human sequences: Figure 1.

4. NONCODE v3.0: integrative annotation of long noncoding RNAs

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