Effects of Restrained Sampling Space and Nonplanar Amino Groups on Free-Energy Predictions for RNA with Imino and Sheared Tandem GA Base Pairs Flanked by GC, CG, iGiC or iCiG Base Pairs-Reference-Cited by-同舟云学术

Effects of Restrained Sampling Space and Nonplanar Amino Groups on Free-Energy Predictions for RNA with Imino and Sheared Tandem GA Base Pairs Flanked by GC, CG, iGiC or iCiG Base Pairs

Published:2009-07-02 Issue:8 Volume:5 Page:2088-2100
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Yildirim Ilyas¹,Stern Harry A.¹,Sponer Jiri¹,Spackova Nada¹,Turner Douglas H.¹

Affiliation:

1. Department of Physics and Astronomy, Department of Chemistry and Department of Pediatrics, University of Rochester, Rochester, New York, 14627, and Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 61265 Brno, Czech Republic

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct800540c

Reference56 articles.

1. Structural Dynamics of Precursor and Product of the RNA Enzyme from the Hepatitis Delta Virus as Revealed by Molecular Dynamics Simulations

2. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding 1 1Edited by J. Doudna

3. Nucleic acid solvation: from outside to insight

4. Molecular dynamics simulations of RNA: Anin silico single molecule approach

5. Exploring Global Motions and Correlations in the Ribosome

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