Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops-Reference-Cited by-同舟云学术

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Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops

Published:2018-03-23 Issue:14 Volume:57 Page:2121-2131
ISSN:0006-2960
Container-title:Biochemistry
language:en
Short-container-title:Biochemistry

Author:

Berger Kyle D.¹²,Kennedy Scott D.¹²,Schroeder Susan J.³^ORCID,Znosko Brent M.⁴,Sun Hongying¹²,Mathews David H.¹²^ORCID,Turner Douglas H.²⁵^ORCID

Affiliation:

1. Department of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, United States

2. Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, United States

3. Department of Chemistry, University of Oklahoma, Norman, Oklahoma 73019, United States

4. Department of Chemistry, Saint Louis University, St. Louis, Missouri 63103, United States

5. Department of Chemistry, University of Rochester, Rochester, New York 14627, United States

Funder

National Institute of General Medical Sciences

Publisher

American Chemical Society (ACS)

Subject

Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.biochem.7b01306

Reference103 articles.

1. RNA-Seq: a revolutionary tool for transcriptomics

2. In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features

3. Mod-seq: high-throughput sequencing for chemical probing of RNA structure

4. Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

5. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

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1. A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine;Journal of Molecular Biology;2022-09

2. Secondary Structure Prediction for RNA Sequences Including N6-methyladenosine;2021-04-27

3. Thermodynamic examination of pH and magnesium effect on U6 RNA internal loop;RNA;2019-09-23

4. Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures;Biochemistry;2019-01-31

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