Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA
Author:
Affiliation:
1. Department of Chemistry and Molecular Biophysics Program, Hall-Atwater Laboratories, Wesleyan University, Middletown, Connecticut 06459
Publisher
American Chemical Society (ACS)
Subject
Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry
Link
https://pubs.acs.org/doi/pdf/10.1021/ci0504925
Reference48 articles.
1. Assessment of the molecular dynamics structure of DNA in solution based on calculated and observed NMR NOESY volumes and dihedral angles from scalar coupling constants
2. Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps
3. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
4. All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution
5. A solution for the best rotation to relate two sets of vectors
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