Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps-Reference-Cited by-同舟云学术

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps

Published:2005-12 Issue:6 Volume:89 Page:3721-3740
ISSN:0006-3495
Container-title:Biophysical Journal
language:en
Short-container-title:Biophysical Journal

Author:

Dixit Surjit B.,Beveridge David L.,Case David A.,Cheatham Thomas E.,Giudice Emmanuel,Lankas Filip,Lavery Richard,Maddocks John H.,Osman Roman,Sklenar Heinz,Thayer Kelly M.,Varnai Péter

Publisher

Elsevier BV

Subject

Biophysics

Reference85 articles.

1. Simulation of nucleic acid structure;Miller,1999

2. Nucleic acids: theory and computer simulation, Y2K;Beveridge;Curr. Opin. Struct. Biol.,2000

3. Molecular dynamics simulation of nucleic acids;Cheatham;Annu. Rev. Phys. Chem.,2000

4. Simulations of nucleic acids and their complexes;Giudice;Acc. Chem. Res.,2002

5. Theoretical methods for the simulation of nucleic acids;Orozco;Chem. Soc. Rev.,2003

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