Thermodynamic Characterization of DNA with 3-Deazaadenine and 3-Methyl-3-Deazaadenine Substitutions: The Effect of Placing a Hydrophobic Group in the Minor Groove of DNA-Reference-Cited by-同舟云学术

Thermodynamic Characterization of DNA with 3-Deazaadenine and 3-Methyl-3-Deazaadenine Substitutions: The Effect of Placing a Hydrophobic Group in the Minor Groove of DNA

Published:2010-05-14 Issue:22 Volume:114 Page:7656-7661
ISSN:1520-6106
Container-title:The Journal of Physical Chemistry B
language:en
Short-container-title:J. Phys. Chem. B

Author:

Ganguly Manjori¹,Wang Ruo-Wen¹,Marky Luis A.¹,Gold Barry¹

Affiliation:

1. Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, and Department of Pharmaceutical Sciences, University of Nebraska Medical Center, Omaha, Nebraska 68109-6025

Publisher

American Chemical Society (ACS)

Subject

Materials Chemistry,Surfaces, Coatings and Films,Physical and Theoretical Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/jp101004k

Reference27 articles.

1. Principles of Nucleic Acid Structure

2. Polymorphism of DNA double helices

3. A Bridging Water Anchors the Tethered 5-(3-Aminopropyl)-2′-deoxyuridine Amine in the DNA Major Groove Proximate to the N+2 C·G Base Pair: Implications for Formation of Interstrand 5′-GNC-3′ Cross-Links by Nitrogen Mustards,

4. A study of 7-deaza-2′-deoxyguanosine–2′-deoxycytidine base pairing in DNA

5. Introduction of Cationic Charge into DNA Near the Major Groove Edge of a Guanine•Cytosine Base Pair: Characterization of Oligodeoxynucleotides Substituted with 7-Aminomethyl-7-deaza-2′-deoxyguanosine

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1. Impact of 3-deazapurine nucleobases on RNA properties;Nucleic Acids Research;2021-04-15

2. Structural Comparisons of PEI/DNA and PEI/siRNA Complexes Revealed with Molecular Dynamics Simulations;The Journal of Physical Chemistry B;2017-02-14

3. Synthesis and Polymerase-Mediated Bypass Studies of the N2-Deoxyguanosine DNA Damage Caused by a Lucidin Analogue;The Journal of Organic Chemistry;2015-01-29

4. Specific minor groove solvation is a crucial determinant of DNA binding site recognition;Nucleic Acids Research;2014-11-27

5. The significant role of the intermolecular CH⋯O/N hydrogen bonds in governing the biologically important pairs of the DNA and RNA modified bases: a comprehensive theoretical investigation;Journal of Biomolecular Structure and Dynamics;2014-10-28