Understanding the Sequence Preference of Recurrent RNA Building Blocks Using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform-Reference-Cited by-同舟云学术

Understanding the Sequence Preference of Recurrent RNA Building Blocks Using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform

Published:2011-12-27 Issue:1 Volume:8 Page:335-347
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Mládek Arnošt¹,Šponer Judit E.¹²,Kulhánek Petr²³,Lu Xiang-Jun⁴,Olson Wilma K.⁵,Šponer Jiří¹²

Affiliation:

1. Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 612 65 Brno, Czech Republic

2. CEITEC - Central European Institute of Technology, Masaryk University, Campus Bohunice, Kamenice 5, 625 00 Brno, Czech Republic

3. National Centre for Biomolecular Research, Faculty of Science, Masaryk University, 611 37 Brno, Czech Republic

4. Department of Biological Sciences, Columbia University, New York, New York 10027, United States

5. Department of Chemistry and Chemical Biology, BioMaPS Institute for Quantitative Biology, Rutgers—The State University of New Jersey, Piscataway, New Jersey 08854, United States

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct200712b

Reference75 articles.

1. Geometric nomenclature and classification of RNA base pairs

2. The non-Watson-Crick base pairs and their associated isostericity matrices

3. Quantum Chemical Studies of Nucleic Acids: Can We Construct a Bridge to the RNA Structural Biology and Bioinformatics Communities?

4. Analysis of RNA motifs

5. Classification and energetics of the base-phosphate interactions in RNA

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