Fungarium specimens: a largely untapped source in global change biology and beyond

Author:

Andrew Carrie1ORCID,Diez Jeffrey2,James Timothy Y.3,Kauserud Håvard4ORCID

Affiliation:

1. Swiss Federal Research Institute WSL, 8903 Birmensdorf, Switzerland

2. Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA

3. Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA

4. Section for Genetics and Evolutionary Biology (EVOGENE), Department of Biosciences, University of Oslo, PO Box 1066 Blindern, 0316 Oslo, Norway

Abstract

For several hundred years, millions of fungal sporocarps have been collected and deposited in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale digitization programs, metadata associated with the records are now becoming publicly available, including information on taxonomy, sampling location, collection date and habitat/substrate information. This metadata, as well as data extracted from the physical fungarium specimens themselves, such as DNA sequences and biochemical characteristics, provide a rich source of information not only for taxonomy but also for other lines of biological inquiry. Here, we highlight and discuss how this information can be used to investigate emerging topics in fungal global change biology and beyond. Fungarium data are a prime source of knowledge on fungal distributions and richness patterns, and for assessing red-listed and invasive species. Information on collection dates has been used to investigate shifts in fungal distributions as well as phenology of sporocarp emergence in response to climate change. In addition to providing material for taxonomy and systematics, DNA sequences derived from the physical specimens provide information about fungal demography, dispersal patterns, and are emerging as a source of genomic data. As DNA analysis technologies develop further, the importance of fungarium specimens as easily accessible sources of information will likely continue to grow. This article is part of the theme issue ‘Biological collections for understanding biodiversity in the Anthropocene’.

Funder

Swiss National Science Foundation

Publisher

The Royal Society

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology

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