Exact and rapid linear clustering of networks with dynamic programming

Author:

Patania Alice12ORCID,Allard Antoine234ORCID,Young Jean-Gabriel123ORCID

Affiliation:

1. Department of Mathematics and Statistics, University of Vermont, Burlington, VT 05405, USA

2. Vermont Complex Systems Center, University of Vermont, Burlington, VT 05405, USA

3. Département de Physique, de Génie Physique et D’optique, Université Laval (Québec), Québec, Canada G1V 0A6

4. Centre Interdisciplinaire en Modélisation Mathématique, Université Laval (Québec), Québec, Canada G1V 0A6

Abstract

We study the problem of clustering networks whose nodes have imputed or physical positions in a single dimension, for example prestige hierarchies or the similarity dimension of hyperbolic embeddings. Existing algorithms, such as the critical gap method and other greedy strategies, only offer approximate solutions to this problem. Here, we introduce a dynamic programming approach that returns provably optimal solutions in polynomial time— O ( n 2 ) steps—for a broad class of clustering objectives. We demonstrate the algorithm through applications to synthetic and empirical networks, and show that it outperforms existing heuristics by a significant margin, with a similar execution time.

Funder

James S. McDonnell Foundation

Fonds de recherche du Québec – Nature et technologies

Canada First Research Excellence Fund

Natural Sciences and Engineering Research Council of Canada

Publisher

The Royal Society

Subject

General Physics and Astronomy,General Engineering,General Mathematics

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