A retrospective assessment of COVID-19 model performance in the USA

Author:

Colonna Kyle J.1ORCID,Nane Gabriela F.2,Choma Ernani F.1,Cooke Roger M.23ORCID,Evans John S.1ORCID

Affiliation:

1. Environmental Health Department, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA 02115, USA

2. Department of Mathematics, Delft University of Technology, Delft 2628 XE, The Netherlands

3. Resources for the Future, Washington, DC 20036, USA

Abstract

Coronavirus disease 2019 (COVID-19) forecasts from over 100 models are readily available. However, little published information exists regarding the performance of their uncertainty estimates (i.e. probabilistic performance). To evaluate their probabilistic performance, we employ the classical model (CM), an established method typically used to validate expert opinion. In this analysis, we assess both the predictive and probabilistic performance of COVID-19 forecasting models during 2021. We also compare the performance of aggregated forecasts (i.e. ensembles) based on equal and CM performance-based weights to an established ensemble from the Centers for Disease Control and Prevention (CDC). Our analysis of forecasts of COVID-19 mortality from 22 individual models and three ensembles across 49 states indicates that—(i) good predictive performance does not imply good probabilistic performance, and vice versa; (ii) models often provide tight but inaccurate uncertainty estimates; (iii) most models perform worse than a naive baseline model; (iv) both the CDC and CM performance-weighted ensembles perform well; but (v) while the CDC ensemble was more informative, the CM ensemble was more statistically accurate across states. This study presents a worthwhile method for appropriately assessing the performance of probabilistic forecasts and can potentially improve both public health decision-making and COVID-19 modelling.

Publisher

The Royal Society

Subject

Multidisciplinary

Reference52 articles.

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2. Centers for Disease Control and Prevention (CDC). 2022 NVSS: Provisional Death Counts for COVID-19: Executive Summary. CDC. See https://www.cdc.gov/nchs/covid19/mortality-overview.htm (accessed 22 May 2022).

3. Johns Hopkins University (JHU), Center for Systems Science and Engineering (CSSE). 2022 COVID-19 Dashboard by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (JHU). Johns Hopkins Coronavirus Resource Center. See https://coronavirus.jhu.edu/map.html (accessed 23 February 2022).

4. The next variant: three key questions about what’s after Omicron

5. Centers for Disease Control and Prevention (CDC), National Center for Immunization and Respiratory Diseases (NCIRD), Division of Viral Diseases. 2020 What You Need to Know About Variants. Centers for Disease Control and Prevention. See https://www.cdc.gov/coronavirus/2019-ncov/variants/about-variants.html (accessed 6 March 2022).

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