AI for the collective analysis of a massive number of genome sequences: various examples from the small genome of pandemic SARS-CoV-2 to the human genome-Reference-Cited by-同舟云学术

AI for the collective analysis of a massive number of genome sequences: various examples from the small genome of pandemic SARS-CoV-2 to the human genome

Published:2021-08-01 Issue:4 Volume:96 Page:165-176
ISSN:1341-7568
Container-title:Genes & Genetic Systems
language:en
Short-container-title:Genes Genet. Syst.

Author:

Ikemura Toshimichi¹,Iwasaki Yuki¹,Wada Kennosuke¹,Wada Yoshiko¹,Abe Takashi²

Affiliation:

1. Faculty of Bioscience, Nagahama Institute of Bio-Science and Technology

2. Department of Information Engineering, Faculty of Engineering, Niigata University

Publisher

Genetics Society of Japan

Subject

Genetics,Molecular Biology,General Medicine

Link

https://www.jstage.jst.go.jp/article/ggs/96/4/96_21-00025/_pdf

Reference50 articles.

1. Abe, T., Akazawa, Y., Toyoda, A., Niki, H., and Baba, T. (2020) Batch-Learning Self-Organizing Map identifies horizontal gene transfer candidates and their origins in entire genomes. Front. Microbiol. 11, 1486.

2. Abe, T., Furukawa, R., Iwasaki, Y., and Ikemura, T. (2021) Time-series trend of pandemic SARS-CoV-2 variants visualized using batch-learning self-organizing map for oligonucleotide compositions. bioRxiv. doi: https://doi.org/10.1101/2021.04.15.439956

3. Abe, T., Hamano, Y., and Ikemura, T. (2014a) Visualization of genome signatures of eukaryote genomes by Batch-Learning Self-Organizing Map (BLSOM) with a special emphasis on Drosophila genomes. Biomed Res. Int. 2014, 985706.

4. Abe, T., Ikemura, T., Sugahara, J., Kanai, A., Ohara, Y., Uehara, H., Kinouchi, M., Kanaya, S., Yamada, Y., Muto, A., et al. (2011) tRNADB-CE 2011: tRNA gene database curated manually by experts. Nucleic Acids Res. 39, D210–D213.

5. Abe, T., Inokuchi, H., Yamada, Y., Muto, A., Iwasaki, Y., and Ikemura, T. (2014b) tRNADB-CE: tRNA gene database well-timed in the era of big sequence data. Front. Genet. 5, 114.

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