DMfold: A Novel Method to Predict RNA Secondary Structure With Pseudoknots Based on Deep Learning and Improved Base Pair Maximization Principle-Reference-Cited by-同舟云学术

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DMfold: A Novel Method to Predict RNA Secondary Structure With Pseudoknots Based on Deep Learning and Improved Base Pair Maximization Principle

Published:2019-03-04 Issue: Volume:10 Page:
ISSN:1664-8021
Container-title:Frontiers in Genetics
language:
Short-container-title:Front. Genet.

Author:

Wang Linyu,Liu Yuanning,Zhong Xiaodan,Liu Haiming,Lu Chao,Li Cong,Zhang Hao

Funder

National Natural Science Foundation of China

Natural Science Foundation of Jilin Province

Publisher

Frontiers Media SA

Subject

Genetics (clinical),Genetics,Molecular Medicine

Reference31 articles.

1. ProbKnot: fast prediction of RNA secondary structure including pseudoknots;Bellaousov;RNA,2010

2. RNAalifold: improved consensus structure prediction for RNA alignments;Bernhart;BMC Bioinform,2008

3. Viral RNA pseudoknots: versatile motifs in gene expression and replication;Brierley;Nat. Rev. Microbiol.,2007

4. In vitro splicing of the ribosomal RNA precursor of Tetrahymena: involvement of a guanosine nucleotide in the excision of the intervening sequence;Cech;Cell,1981

5. Learning phrase representations using RNN encoder-decoder for statistical machine translation;Cho,2014

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