Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants

Author:

Butty Adrien M.,Sargolzaei Mehdi,Miglior Filippo,Stothard Paul,Schenkel Flavio S.,Gredler-Grandl Birgit,Baes Christine F.

Funder

Genome Canada

Genome Alberta

Ontario Genomics

Ontario Ministry of Research, Innovation and Science

Ontario Ministry of Agriculture, Food and Rural Affairs

Agricultural Research Service

Aarhus Universitet

Natural Sciences and Engineering Research Council of Canada

Publisher

Frontiers Media SA

Subject

Genetics (clinical),Genetics,Molecular Medicine

Reference42 articles.

1. Fast principal component analysis of large-scale genome-wide data.;Abraham;PLoS One,2014

2. Evaluation of variant identification methods for whole genome sequencing data in dairy cattle.;Baes;BMC Genomics,2014

3. Reducing animal sequencing redundancy by preferentially selecting animals with low-frequency haplotypes.;Bickhart;J. Dairy Sci.,2016

4. Characteristics of linkage disequilibrium in north american holsteins.;Bohmanova;BMC Genomics,2010

5. “Pedig?: a Fortran Package for Pedigree Analysis Suited for Large Populations,” in;Boichard;Proceedings of the 7th World Congress on Genetics Applied to Livestock Production,2002

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