MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries-Reference-Cited by-同舟云学术

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MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries

Published:2019-08-20 Issue: Volume:10 Page:
ISSN:1664-8021
Container-title:Frontiers in Genetics
language:
Short-container-title:Front. Genet.

Author:

Baudry Lyam,Foutel-Rodier Théo,Thierry Agnès,Koszul Romain,Marbouty Martial

Funder

Agence Nationale de la Recherche

Publisher

Frontiers Media SA

Subject

Genetics(clinical),Genetics,Molecular Medicine

Reference55 articles.

1. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes;Albertsen;Nat. Biotechnol.,2013

2. Binning metagenomic contigs by coverage and composition;Alneberg;Nat. Methods,2014

3. Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing Proximity Ligation Products;Beitel;PeerJ,2014

4. METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data;Bengtsson-Palme;Mol. Ecol. Resour.,2015

5. Fast unfolding of communities in large networks;Blondel;J. Stat. Mech. Theory E,2008

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1. Imputing Metagenomic Hi-C Contacts Facilitates the Integrative Contig Binning Through Constrained Random Walk with Restart;Journal of Computational Biology;2024-09-09

2. ImputeCC Enhances Integrative Hi-C-Based Metagenomic Binning Through Constrained Random-Walk-Based Imputation;Lecture Notes in Computer Science;2024

3. MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data;Nature Communications;2023-10-06

4. A meta-omics approach to explore the biofuel-producing enzyme potential from extreme environmental conditions;Renewable and Sustainable Energy Reviews;2023-10

5. A survey on computational strategies for genome-resolved gut metagenomics;Briefings in Bioinformatics;2023-04-27

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