Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription-Reference-Cited by-同舟云学术

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription

Published:2019-07-12 Issue: Volume:10 Page:
ISSN:1664-302X
Container-title:Frontiers in Microbiology
language:
Short-container-title:Front. Microbiol.

Author:

Grünberger Felix,Reichelt Robert,Bunk Boyke,Spröer Cathrin,Overmann Jörg,Rachel Reinhard,Grohmann Dina,Hausner Winfried

Funder

Deutsche Forschungsgemeinschaft

Publisher

Frontiers Media SA

Subject

Microbiology (medical),Microbiology

Reference68 articles.

1. Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq).;Babski;BMC Genomics,2016

2. MEME suite: tools for motif discovery and searching.;Bailey;Nucleic Acids Res.,2009

3. Orientation of the transcription preinitiation complex in Archaea.;Bell;Proc. Natl. Acad. Sci. U.S.A.,1999

4. Diversity of antisense and other non-coding RNAs in archaea revealed by comparative small RNA sequencing in four Pyrobaculum species.;Bernick;Front. Microbiol.,2012

5. Trimmomatic: a flexible trimmer for Illumina sequence data.;Bolger;Bioinformatics,2014

Cited by 15 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Cryo-EM Structures ofSaccharolobus solfataricusInitiation Complexes with Leaderless mRNAs Highlight Archaeal Features and Eukaryotic Proximity;2024-07-16

2. Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea;mBio;2024-02-14

3. Uncovering the temporal dynamics and regulatory networks of thermal stress response in a hyperthermophile using transcriptomics and proteomics;mBio;2023-12-19

4. The transcriptional regulator EarA and intergenic terminator sequences modulate archaellation in Pyrococcus furiosus;Frontiers in Microbiology;2023-11-09

5. The archaeal Lsm protein from Pyrococcus furiosus binds co-transcriptionally to poly(U)-rich target RNAs;Biological Chemistry;2023-09-15