Advanced Raman Spectroscopy Based on Transfer Learning by Using a Convolutional Neural Network for Personalized Colorectal Cancer Diagnosis

Author:

Kalatzis Dimitris1ORCID,Spyratou Ellas12ORCID,Karnachoriti Maria23ORCID,Kouri Maria Anthi124ORCID,Orfanoudakis Spyros5ORCID,Koufopoulos Nektarios6ORCID,Pouliakis Abraham6ORCID,Danias Nikolaos7,Seimenis Ioannis8ORCID,Kontos Athanassios G.3ORCID,Efstathopoulos Efstathios P.1ORCID

Affiliation:

1. 2nd Department of Radiology, Medical School, National and Kapodistrian University of Athens, 12462 Athens, Greece

2. Department of Medicine, Democritus University of Thrace, 68100 Alexandroupolis, Greece

3. Physics Department, School of Applied Mathematical and Physical Sciences, National Technical University of Athens, Iroon Politechniou 9, Zografou, 15780 Athens, Greece

4. Medical Physics Program, University of Massachusetts Lowell, 265 Riverside St, Lowell, MA 01854, USA

5. Alpha Information Technology S.A., Software & System Development, 39 Dimokratias Avenue, 68131 Alexandroupolis, Greece

6. 2nd Department of Pathology, School of Medicine, Attikon University Hospital, National and Kapodistrian University of Athens, 12462 Athens, Greece

7. 4th Department of Surgery, School of Medicine, Attikon University Hospital, University of Athens, 1 Rimini Street, 12462 Athens, Greece

8. Medical School, National and Kapodistrian University of Athens, 75 Mikras Assias Str., 11527 Athens, Greece

Abstract

Advanced Raman spectroscopy (RS) systems have gained new interest in the field of medicine as an emerging tool for in vivo tissue discrimination. The coupling of RS with artificial intelligence (AI) algorithms has given a boost to RS to analyze spectral data in real time with high specificity and sensitivity. However, limitations are still encountered due to the large amount of clinical data which are required for the pre-training process of AI algorithms. In this study, human healthy and cancerous colon specimens were surgically resected from different sites of the ascending colon and analyzed by RS. Two transfer learning models, the one-dimensional convolutional neural network (1D-CNN) and the 1D–ResNet transfer learning (1D-ResNet) network, were developed and evaluated using a Raman open database for the pre-training process which consisted of spectra of pathogen bacteria. According to the results, both models achieved high accuracy of 88% for healthy/cancerous tissue discrimination by overcoming the limitation of the collection of a large number of spectra for the pre-training process. This gives a boost to RS as an adjuvant tool for real-time biopsy and surgery guidance.

Funder

European Regional Development Fund of the European Union

Publisher

MDPI AG

Subject

General Medicine

Reference33 articles.

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