An open competition involving thousands of competitors failed to construct useful abstract classifiers for new diagnostic test accuracy systematic reviews

Author:

Kataoka Yuki1234ORCID,Taito Shunsuke25ORCID,Yamamoto Norio267ORCID,So Ryuhei289ORCID,Tsutsumi Yusuke2410ORCID,Anan Keisuke21112ORCID,Banno Masahiro21314ORCID,Tsujimoto Yasushi21516ORCID,Wada Yoshitaka217ORCID,Sagami Shintaro1819ORCID,Tsujimoto Hiraku20ORCID,Nihashi Takashi21,Takeuchi Motoki22,Terasawa Teruhiko23,Iguchi Masahiro24,Kumasawa Junji2526ORCID,Ichikawa Takumi27,Furukawa Ryuki27,Yamabe Jun28,Furukawa Toshi A.16ORCID

Affiliation:

1. Department of Internal Medicine Kyoto Min‐iren Asukai Hospital Kyoto Japan

2. Scientific Research Works Peer Support Group (SRWS‐PSG) Osaka Japan

3. Section of Clinical Epidemiology, Department of Community Medicine Kyoto University Graduate School of Medicine Kyoto Japan

4. Department of Healthcare Epidemiology Kyoto University Graduate School of Medicine/School of Public Health Kyoto Japan

5. Division of Rehabilitation, Department of Clinical Practice and Support Hiroshima University Hospital Hiroshima Japan

6. Department of Orthopedic Surgery Miyamoto Orthopedic Hospital Okayama Japan

7. Department of Epidemiology Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University Okayama Japan

8. Department of Psychiatry Okayama Psychiatric Medical Center Okayama Japan

9. CureApp, Inc. Tokyo Japan

10. Department of Emergency Medicine National Hospital Organization Mito Medical Center Ibaraki Japan

11. Division of Respiratory Medicine Saiseikai Kumamoto Hospital Kumamoto Japan

12. Department of Healthcare Epidemiology Graduate School of Medicine and Public Health, Kyoto University Kyoto Japan

13. Department of Psychiatry Seichiryo Hospital Nagoya Japan

14. Department of Psychiatry Nagoya University Graduate School of Medicine Nagoya Japan

15. Oku Medical Clinic Osaka Japan

16. Department of Health Promotion and Human Behavior Kyoto University Graduate School of Medicine/School of Public Health, Kyoto University Kyoto Japan

17. Department of Rehabilitation Medicine School of Medicine, Fujita Health University Toyoake Japan

18. Center for Advanced IBD Research and Treatment Kitasato University Kitasato Institute Hospital Tokyo Japan

19. Department of Gastroenterology and Hepatology Kitasato University Kitasato Institute Hospital Tokyo Japan

20. Hospital Care Research Unit Hyogo Prefectural Amagasaki General Medical Center Amagasaki Japan

21. Department of Radiology Komaki City Hospital Komaki Japan

22. Department of Emergency and General Internal Medicine Fujita Health University School of Medicine Toyoake Japan

23. Section of General Internal Medicine, Department of Emergency and General Internal Medicine Fujita Health University School of Medicine Toyoake Japan

24. Department of Neurology Fukushima Medical University Fukushima Japan

25. Human Health Sciences Kyoto University Graduate School of Medicine Kyoto Japan

26. Department of Critical Care Medicine Sakai City Medical Center Sakai Japan

27. Yahoo Japan Corporation Tokyo Japan

28. Self‐employed Engineer Tokyo Japan

Abstract

AbstractThere are currently no abstract classifiers, which can be used for new diagnostic test accuracy (DTA) systematic reviews to select primary DTA study abstracts from database searches. Our goal was to develop machine‐learning‐based abstract classifiers for new DTA systematic reviews through an open competition. We prepared a dataset of abstracts obtained through database searches from 11 reviews in different clinical areas. As the reference standard, we used the abstract lists that required manual full‐text review. We randomly splitted the datasets into a train set, a public test set, and a private test set. Competition participants used the training set to develop classifiers and validated their classifiers using the public test set. The classifiers were refined based on the performance of the public test set. They could submit as many times as they wanted during the competition. Finally, we used the private test set to rank the submitted classifiers. To reduce false exclusions, we used the Fbeta measure with a beta set to seven for evaluating classifiers. After the competition, we conducted the external validation using a dataset from a cardiology DTA review. We received 13,774 submissions from 1429 teams or persons over 4 months. The top‐honored classifier achieved a Fbeta score of 0.4036 and a recall of 0.2352 in the external validation. In conclusion, we were unable to develop an abstract classifier with sufficient recall for immediate application to new DTA systematic reviews. Further studies are needed to update and validate classifiers with datasets from other clinical areas.

Funder

Fujifilm Corporation

Publisher

Wiley

Subject

Education

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