Distinguish protein decoys by Using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model-Reference-Cited by-同舟云学术

Distinguish protein decoys by Using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model

Published:2004-04-01 Issue:3 Volume:55 Page:620-634
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Lee Mathew C.,Duan Yong

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Reference53 articles.

1. Principles that govern the folding of protein chains;Anfinsen;Science,1973

2. Unfolded conformations of alpha-lytic protease are more stable than its native state;Sohl;Nature,1998

3. Effective energy functions for protein structure prediction;Lazaridis;Curr Opin Struct Biol,2000

4. Enthalpic contribution to protein stability: insights from atom-based calculations and statistical mechanics;Lazaridis;Adv Protein Chem,1995

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