Bioprospecting the potential of metabolites from a Saharan saline soil strain Nocardiopsis dassonvillei GSBS4

Abstract

AbstractSaharan soil samples collected in El‐Oued province have been investigated for actinobacteria as a valuable source for the production of bioactive metabolites. A total of 273 isolates were obtained and subjected to antagonistic activity tests against human pathogenic germs. A strain with a broad‐spectrum antimicrobial activity was selected and identified as Nocardiopsis dassonvillei GSBS4, with high sequence similarities to N. dassonvillei subsp. dassonvilleiT X97886.1 (99%) based on polyphasic taxonomy approach and 16S ribosomal ribonucleic acid gene sequence analysis. The GSBS4 ethyl acetate crude extract showed strong antibacterial activity towards pathogenic bacteria and Candida albicans. It inhibited biofilm formation by Staphylococcus aureus and methicillin‐resistant S. aureus with minimum inhibitory concentrations estimated at 0.144 and 1.15 mg·mL−1, respectively. A 44% biofilm reduction was obtained for S. aureus and 61% for Pseudomonas aeruginosa. Furthermore, phenols composition of the crude extract showed a significant dose‐dependent antioxidant activity by α‐diphenyl‐β‐picrylhydrazyl (57.21%) and 2,2′‐azinobis (3‐ethylbenzothiazoline‐6‐sulfonic acid) (64.29%) radicals scavenging assays. Although no inhibition was obtained on human coronavirus human coronavirus (HCoV) 229E and on model enterovirus (poliovirus 1) infection, a dose‐dependent increase in cell viability of HCoV 229E‐infected cells was noticed as the viability increased from 21% to 37%. Bioassay‐guided fractionation of the crude extract gave a fraction showing antibacterial activity, which was analyzed by liquid chromatography‐electrospray mass spectrometric technique, providing structural features on a major purple metabolite.