PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data-Reference-Cited by-同舟云学术

PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data

Published:2022-05 Issue:3 Volume:10 Page:
ISSN:2168-0450
Container-title:Applications in Plant Sciences
language:en
Short-container-title:Appl Plant Sci

Author:

Cai Liming¹²³^ORCID,Zhang Hongrui¹^ORCID,Davis Charles C.¹^ORCID

Affiliation:

1. Harvard University Herbaria 22 Divinity Avenue, Cambridge Massachusetts 02138 USA

2. Department of Integrative Biology University of Texas at Austin Austin Texas 78712 USA

3. Department of Botany and Plant Sciences University of California Riverside California 92507 USA

Publisher

Wiley

Subject

Plant Science,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/aps3.11475

Reference38 articles.

1. Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

2. Cai L. H.Zhang andC. C.Davis.2021. Herbariomics‐based biodiversity research: from specimen to phylogeny. Botany 2021: Annual Meeting of the Botanical Society of America held online [online abstract]. Website:https://2021.botanyconference.org/engine/search/index.php?func=detail%26aid=20[accessed 19 April 2022].

3. NOVOPlasty: De novo assembly of organelle genomes from whole genome data;Dierckxsens N.;Nucleic Acids Research,2017

4. Defining Coalescent Genes: Theory Meets Practice in Organelle Phylogenomics

5. High‐throughput methods for efficiently building massive phylogenies from natural history collections

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