Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

Author:

Bakker Freek T.1,Lei Di1,Yu Jiaying1,Mohammadin Setareh1,Wei Zhen1,van de Kerke Sara1,Gravendeel Barbara234,Nieuwenhuis Mathijs1,Staats Martijn1,Alquezar-Planas David E.5,Holmer Rens1

Affiliation:

1. Biosystematics Group; Wageningen University; Wageningen the Netherlands

2. Naturalis Biodiversity Center; Leiden University; Leiden the Netherlands

3. University of Applied Sciences Leiden; Leiden the Netherlands

4. Plant Ecology and Phytochemistry Group; Institute Biology Leiden; Leiden University; Leiden the Netherlands

5. Centre for GeoGenetics; Natural History Museum of Denmark; University of Copenhagen; Copenhagen Denmark

Funder

EU FP7

Publisher

Oxford University Press (OUP)

Subject

Ecology, Evolution, Behavior and Systematics

Reference32 articles.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;Journal of Computational Biology,2012

2. Herbaria are a major frontier for species discovery;Bebber;Proceedings of the National Academy of Sciences of the United States of America,2010

3. Bennett MD Leitch IJ 2012 Angiosperm DNA C-values database (release 8.0, Dec. 2012) http://www.kew.org/cvalues/

4. From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition;Besnard;Journal of Experimental Botany,2014

5. Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke;Bock;New Phytologist,2014

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