Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline-Reference-Cited by-同舟云学术

Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

Published:2015-08-07 Issue:1 Volume:117 Page:33-43
ISSN:0024-4066
Container-title:Biological Journal of the Linnean Society
language:en
Short-container-title:Biol. J. Linn. Soc.

Author:

Bakker Freek T.¹,Lei Di¹,Yu Jiaying¹,Mohammadin Setareh¹,Wei Zhen¹,van de Kerke Sara¹,Gravendeel Barbara²³⁴,Nieuwenhuis Mathijs¹,Staats Martijn¹,Alquezar-Planas David E.⁵,Holmer Rens¹

Affiliation:

1. Biosystematics Group; Wageningen University; Wageningen the Netherlands

2. Naturalis Biodiversity Center; Leiden University; Leiden the Netherlands

3. University of Applied Sciences Leiden; Leiden the Netherlands

4. Plant Ecology and Phytochemistry Group; Institute Biology Leiden; Leiden University; Leiden the Netherlands

5. Centre for GeoGenetics; Natural History Museum of Denmark; University of Copenhagen; Copenhagen Denmark

Funder

EU FP7

Publisher

Oxford University Press (OUP)

Subject

Ecology, Evolution, Behavior and Systematics

Link

http://academic.oup.com/biolinnean/article-pdf/117/1/33/16710364/bij12642.pdf

Reference32 articles.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;Journal of Computational Biology,2012

2. Herbaria are a major frontier for species discovery;Bebber;Proceedings of the National Academy of Sciences of the United States of America,2010

3. Bennett MD Leitch IJ 2012 Angiosperm DNA C-values database (release 8.0, Dec. 2012) http://www.kew.org/cvalues/

4. From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition;Besnard;Journal of Experimental Botany,2014

5. Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke;Bock;New Phytologist,2014

Cited by 131 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Skimming the skaters: genome skimming improves phylogenetic resolution of Halobatinae (Hemiptera: Gerridae);Insect Systematics and Diversity;2024-07-01

2. Plastid phylogenomics with broad taxon sampling provides insights into the generic delimitation of Paraphlomideae (Lamiaceae);TAXON;2024-06-26

3. Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae;PLOS ONE;2024-05-20

4. Herbaria of Russia: Role in the Study of Biodiversity of the Country, Problems of Conservation and Rational Use;Biology Bulletin Reviews;2024-05-14

5. Comparative chloroplast genomics of Caryophyllaceae species: Insights into sequence variations and phylogenetic evolution;2024-02-12