Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics-Reference-Cited by-同舟云学术

Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics

Published:2018-03 Issue:3 Volume:6 Page:
ISSN:2168-0450
Container-title:Applications in Plant Sciences
language:en
Short-container-title:Appl Plant Sci

Author:

Chau John H.¹²^ORCID,Rahfeldt Wolfgang A.¹,Olmstead Richard G.¹

Affiliation:

1. Department of Biology and Burke Museum University of Washington Box 351800 Seattle Washington 98195 USA

2. Centre for Ecological Genomics and Wildlife Conservation Department of Zoology University of Johannesburg P.O. Box 524 Auckland Park 2006 South Africa

Funder

National Science Foundation

Publisher

Wiley

Subject

Plant Science,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/aps3.1032

Reference57 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

2. Trimmomatic: a flexible trimmer for Illumina sequence data

3. Anchored phylogenomics of angiosperms I: Assessing the robustness of phylogenetic estimates;Buddenhagen C.;bioRxiv,2016

4. MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

5. Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae)

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