Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI-Reference-Cited by-同舟云学术

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI

Published:2017-05-16 Issue:9 Volume:38 Page:1042-1050
ISSN:1059-7794
Container-title:Human Mutation
language:en
Short-container-title:Human Mutation

Author:

Carraro Marco¹,Minervini Giovanni¹,Giollo Manuel¹²,Bromberg Yana³⁴⁵,Capriotti Emidio⁶,Casadio Rita⁷,Dunbrack Roland⁸^ORCID,Elefanti Lisa⁹,Fariselli Pietro¹⁰,Ferrari Carlo²,Gough Julian¹¹,Katsonis Panagiotis¹²^ORCID,Leonardi Emanuela¹³,Lichtarge Olivier¹²¹⁴¹⁵¹⁶,Menin Chiara⁹,Martelli Pier Luigi⁶,Niroula Abhishek¹⁷^ORCID,Pal Lipika R.¹⁸,Repo Susanna¹⁹,Scaini Maria Chiara⁹,Vihinen Mauno¹⁷,Wei Qiong⁷,Xu Qifang⁷,Yang Yuedong²⁰,Yin Yizhou¹⁸²¹,Zaucha Jan¹¹,Zhao Huiying²²,Zhou Yaoqi²⁰,Brenner Steven E.²³,Moult John¹⁸²⁴^ORCID,Tosatto Silvio C. E.¹²⁵^ORCID

Affiliation:

1. Department of Biomedical SciencesUniversity of Padova Padova Italy

2. Department of Information EngineeringUniversity of Padova Padova Italy

3. Department of Biochemistry and MicrobiologyRutgers University New Brunswick New Jersey

4. Department of GeneticsRutgers University Piscataway New Jersey

5. Technical University of Munich Institute for Advanced Study (TUM‐IAS) Garching/Munich Germany

6. BioFolD UnitDepartment of Biological, Geological, and Environmental Sciences (BiGeA)University of Bologna Bologna Italy

7. Biocomputing GroupDepartment of Biological, Geological, and Environmental Sciences (BiGeA)University of Bologna Bologna Italy

8. Institute for Cancer Research Fox Chase Cancer Center Philadelphia Pennsylvania

9. Immunology and Molecular Oncology UnitVeneto Institute of Oncology Padua Italy

10. Department of Comparative Biomedicine and Food ScienceUniversity of Padua viale dell'Università 16 35020 Legnaro (PD) Italy

11. Department of Computer ScienceUniversity of Bristol Bristol UK

12. Department of Human and Molecular GeneticsBaylor College of Medicine Houston Texas

13. Department of Woman and Child HealthUniversity of Padova Padova Italy

14. Department of Biochemistry & Molecular BiologyBaylor College of Medicine Houston Texas

15. Department of PharmacologyBaylor College of Medicine Houston Texas

16. Computational and Integrative Biomedical Research CenterBaylor College of Medicine Houston Texas

17. Protein Structure and Bioinformatics GroupDepartment of Experimental Medical ScienceLund University Lund Sweden

18. Institute for Bioscience and Biotechnology ResearchUniversity of Maryland Rockville Maryland

19. EMBL‐EBIWellcome Trust Genome Campus Hinxton Cambridge UK

20. Institute for Glycomics and School of Information and Communication TechnologyGriffith University Gold Coast Queensland Australia

21. Computational BiologyBioinformatics and GenomicsBiological Sciences Graduate ProgramUniversity of Maryland College Park Maryland

22. Institute of Health and Biomedical InnovationQueensland University of Technology Queensland Australia

23. Department of Plant and Microbial BiologyUniversity of California Berkeley California

24. Department of Cell Biology and Molecular GeneticsUniversity of Maryland College Park Maryland

25. CNR Institute of Neuroscience Padova Italy

Funder

European Cooperation in Science and Technology

Associazione Italiana per la Ricerca sul Cancro

Ministero della Salute

National Health and Medical Research Council

National Institutes of Health

Publisher

Wiley

Subject

Genetics (clinical),Genetics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/humu.23235

Reference27 articles.

1. TheCDKN2A/p16INK4a5′UTR sequence and translational regulation: impact of novel variants predisposing to melanoma

2. Genetics of familial melanoma: 20 years afterCDKN2A

3. Functional annotations improve the predictive score of human disease-related mutations in proteins

4. WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation

5. Modeling Symmetric Macromolecular Structures in Rosetta3

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