Single nucleotide polymorphism calling and imputation strategies for cost‐effective genotyping in a tropical maize breeding program-Reference-Cited by-同舟云学术

Single nucleotide polymorphism calling and imputation strategies for cost‐effective genotyping in a tropical maize breeding program

Published:2020-09-17 Issue:6 Volume:60 Page:3066-3082
ISSN:0011-183X
Container-title:Crop Science
language:en
Short-container-title:Crop Sci.

Author:

Oliveira Amanda Avelar¹^ORCID,Guimarães Lauro José Moreira²,Guimarães Claudia Teixeira²,Guimarães Paulo Evaristo de Oliveira²,Pinto Marcos de Oliveira²,Pastina Maria Marta²^ORCID,Margarido Gabriel Rodrigues Alves¹^ORCID

Affiliation:

1. “Luiz de Queiroz” College of Agriculture, Department of Genetics University of São Paulo Piracicaba SP 13418–900 Brazil

2. Embrapa Milho e Sorgo Sete Lagoas MG 35701–970 Brazil

Publisher

Wiley

Subject

Agronomy and Crop Science

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/csc2.20255

Reference39 articles.

1. Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

2. Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle

3. Genotype Imputation with Millions of Reference Samples

4. Simultaneous Genotype Calling and Haplotype Phasing Improves Genotype Accuracy and Reduces False-Positive Associations for Genome-wide Association Studies

5. Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

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