Singular value decomposition of protein sequences as a method to visualize sequence and residue space-Reference-Cited by-同舟云学术

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Singular value decomposition of protein sequences as a method to visualize sequence and residue space

Published:2022-09-27 Issue:10 Volume:31 Page:
ISSN:0961-8368
Container-title:Protein Science
language:en
Short-container-title:Protein Science

Author:

Baxter‐Koenigs Autum R.¹²,El Nesr Gina¹³^ORCID,Barrick Doug¹^ORCID

Affiliation:

1. T.C. Jenkins Department of Biophysics Johns Hopkins University Baltimore Maryland USA

2. Department of Genetics Harvard Medical School, New Research Building 0356, 77 Avenue Louis Pasteur Boston Massachusetts 02115 USA

3. Program in Biophysics Stanford University Stanford California 94305 USA

Funder

National Institute of General Medical Sciences

Johns Hopkins University

National Institutes of Health

Publisher

Wiley

Subject

Molecular Biology,Biochemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/pro.4422

Reference31 articles.

1. Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models

2. Direct-coupling analysis of residue coevolution captures native contacts across many protein families

3. An evolution-based model for designing chorismate mutase enzymes

4. Protein Sectors: Evolutionary Units of Three-Dimensional Structure

5. Evolution-Based Functional Decomposition of Proteins

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. The importance of input sequence set to consensus‐derived proteins and their relationship to reconstructed ancestral proteins;Protein Science;2024-05-15

2. The importance of input sequence set to consensus-derived proteins and their relationship to reconstructed ancestral proteins;2023-07-01

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