Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10-Reference-Cited by-同舟云学术

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10

Published:2014-01-25 Issue: Volume:82 Page:26-42
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Kryshtafovych Andriy¹,Moult John²³,Bales Patrick³,Bazan J. Fernando⁴⁵,Biasini Marco⁶⁷,Burgin Alex⁸,Chen Chen³,Cochran Frank V.⁹,Craig Timothy K.¹⁰,Das Rhiju⁹¹¹,Fass Deborah¹²,Garcia-Doval Carmela¹³,Herzberg Osnat³¹⁴,Lorimer Donald¹⁰,Luecke Hartmut¹⁵¹⁶¹⁷¹⁸,Ma Xiaolei⁴⁵,Nelson Daniel C.³¹⁹,van Raaij Mark J.¹³,Rohwer Forest²⁰,Segall Anca²⁰,Seguritan Victor²⁰,Zeth Kornelius¹⁷¹⁸,Schwede Torsten⁶⁷

Affiliation:

1. Genome Center, University of California; Davis California 95616

2. Department of Cell Biology and Molecular Genetics; University of Maryland, College Park; Maryland 20742

3. Institute for Bioscience and Biotechnology Research; University of Maryland; Rockville Maryland 20850

4. Department of Protein Engineering; Genentech; South San Francisco California 94080

5. Department of Structural Biology; Genentech; South San Francisco California 94080

6. Biozentrum; University of Basel; Basel 4056 Switzerland

7. SIB Swiss Institute of Bioinformatics; Basel 4056 Switzerland

8. Broad Institute; Cambridge Massachusetts 02142

9. Department of Biochemistry; Stanford University; Stanford California 94305

10. Emerald Bio; Bainbridge Isle; Washington 98110

11. Department of Physics; Stanford University; Stanford California 94305

12. Department of Structural Biology; Weizmann Institute of Science; Rehovot 76100 Israel

13. Centro Nacional de Biotecnologia (CNB-CSIC); Madrid E-28049 Spain

14. Department of Chemistry and Biochemistry; University of Maryland; College Park Maryland 20742

15. Department of Biochemistry and Biophysics; Center for Biomembrane Systems, University of California; Irvine California 92697-3900

16. Department of Computer Science; Center for Biomembrane Systems, University of California; Irvine California 92697-3900

17. Unidad de Biofisica (CSIC-UPV/EHU); Bizkaia Spain

18. IKERBASQUE, Basque Foundation for Science; Bilbao Spain

19. Department of Veterinary Medicine; University of Maryland; College Park Maryland 20742

20. Department of Biology; San Diego State University; San Diego California 92182

Funder

US National Institutes of Health

Spanish Ministry of Economy and Competitiveness

US National Institutes of General Medical Sciences

UC Irvine Center for Biomembrane Systems, Spanish Ministry of Education

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/prot.24489/fullpdf

Reference74 articles.

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2. Target highlights in CASP9: experimental target structures for the critical assessment of techniques for protein structure prediction;Kryshtafovych;Proteins,2011

3. LGA: a method for finding 3D similarities in protein structures;Zemla;Nucleic Acids Res,2003

4. lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests;Mariani;Bioinformatics,2013

5. Using Dali for structural comparison of proteins;Holm;Curr Protoc Bioinformatics,2006

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