Assessing computational predictions of the phenotypic effect of cystathionine‐beta‐synthase variants-Reference-Cited by-同舟云学术

Assessing computational predictions of the phenotypic effect of cystathionine‐beta‐synthase variants

Published:2019-09 Issue:9 Volume:40 Page:1530-1545
ISSN:1059-7794
Container-title:Human Mutation
language:en
Short-container-title:Human Mutation

Author:

Kasak Laura¹²^ORCID,Bakolitsa Constantina¹^ORCID,Hu Zhiqiang¹^ORCID,Yu Changhua¹,Rine Jasper³^ORCID,Dimster‐Denk Dago F.³,Pandey Gaurav¹^ORCID,Baets Greet⁴⁵^ORCID,Bromberg Yana⁶^ORCID,Cao Chen⁷⁸,Capriotti Emidio⁹^ORCID,Casadio Rita¹⁰^ORCID,Durme Joost⁴¹¹,Giollo Manuel¹²^ORCID,Karchin Rachel¹³^ORCID,Katsonis Panagiotis¹⁴^ORCID,Leonardi Emanuela¹⁵^ORCID,Lichtarge Olivier¹⁴^ORCID,Martelli Pier Luigi¹⁰^ORCID,Masica David¹³,Mooney Sean D.¹⁶^ORCID,Olatubosun Ayodeji¹⁷,Radivojac Predrag¹⁸¹⁹^ORCID,Rousseau Frederic⁴⁵^ORCID,Pal Lipika R.⁷^ORCID,Savojardo Castrense¹⁰^ORCID,Schymkowitz Joost⁴⁵^ORCID,Thusberg Janita¹⁶^ORCID,Tosatto Silvio C.E.¹²^ORCID,Vihinen Mauno¹⁷^ORCID,Väliaho Jouni¹⁷,Repo Susanna¹^ORCID,Moult John⁵²⁰^ORCID,Brenner Steven E.¹^ORCID,Friedberg Iddo²¹²²^ORCID

Affiliation:

1. Department of Plant and Microbial Biology University of California Berkeley California

2. Institute of Biomedicine and Translational Medicine University of Tartu Tartu Estonia

3. California Institute for Quantitative Biosciences University of California Berkeley California

4. Switch Laboratory VIB Center for Brain and Disease Research Leuven Belgium

5. Department of Cellular and Molecular Medicine KU Leuven Leuven Belgium

6. Department of Biochemistry and Microbiology Rutgers University New Brunswick New Jersey

7. Institute for Bioscience and Biotechnology Research University of Maryland Rockville Maryland

8. Computational Biology, Bioinformatics and Genomics, Biological Sciences Graduate Program University of Maryland College Park Maryland

9. Department of Bioengineering Stanford University Stanford California

10. Biocomputing Group, Department of Pharmacy and Biotechnology University of Bologna Bologna Italy

11. VIB Switch Laboratory Vrije Universiteit Brussel Brussels Belgium

12. Department of Biomedical Sciences University of Padua Padua Italy

13. Department of Biomedical Engineering and Institute for Computational Medicine Johns Hopkins University Baltimore Maryland

14. Department of Molecular and Human Genetics Baylor College of Medicine Houston Texas

15. Department for Woman and Child Health University of Padua Italy

16. Computational Biology Group Buck Institute for Research on Aging Novato California

17. Institute of Medical Technology University of Tampere Tampere Finland

18. School of Informatics and Computing Indiana University Bloomington Indiana

19. Khoury College of Computer Sciences Northeastern University Boston Massachusetts

20. Department of Cell Biology and Molecular Genetics University of Maryland College Park Maryland

21. Department of Microbiology Miami University Oxford Ohio

22. Department of Veterinary Microbiology and Preventive Medicine Iowa State University Ames Iowa

Funder

Foundation for the National Institutes of Health

Eesti Teadusagentuur

National Science Foundation

Publisher

Wiley

Subject

Genetics (clinical),Genetics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/humu.23868

Reference48 articles.

1. A method and server for predicting damaging missense mutations

2. SNAP: predict effect of non-synonymous polymorphisms on function

3. SNAP predicts effect of mutations on protein function

4. CAGI(2010/2011). CBS challenge dataset; Dataset available to registered users from the CAGI web site:https://genomeinterpretation.org/content/cagi‐2011‐results.

5. A three-state prediction of single point mutations on protein stability changes

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