Pooling Strategy for Massive Viral Sequencing-Reference-Cited by-同舟云学术

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Pooling Strategy for Massive Viral Sequencing

Published:2016-08-26 Issue: Volume: Page:57-83
ISSN:
Container-title:Computational Methods for Next Generation Sequencing Data Analysis
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Author:

Skums Pavel¹,Artyomenko Alexander²,Glebova Olga²,Ramachandran Sumathi¹,Campo David S.¹,Dimitrova Zoya¹,Măndoiu Ion I.³,Zelikovsky Alexander²,Khudyakov Yury¹

Affiliation:

1. Division of Viral Hepatitis; Centers of Disease Control and Prevention; Atlanta GA USA

2. Department of Computer Science; Georgia State University; Atlanta GA USA

3. Department of Computer Science and Engineering; University of Connecticut; Storrs CT USA

Publisher

John Wiley & Sons, Inc.

Reference46 articles.

1. ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data;Zagordi;BMC Bioinformatics,2011

2. Inferring viral quasispecies spectra from 454 pyrosequencing reads;Astrovskaya;BMC Bioinformatics,2011

3. QuRe: software for viral quasispecies reconstruction from next-generation sequencing data;Prosperi;Bioinformatics,2012

4. Reconstructing viral quasispecies from NGS amplicon reads;Mancuso;In Silico Biol,2012

5. Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows;Skums;BMC Bioinformatics,2013

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