A multi-GPU protein database search model with hybrid alignment manner on distributed GPU clusters-Reference-Cited by-同舟云学术

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A multi-GPU protein database search model with hybrid alignment manner on distributed GPU clusters

Published:2018-04-20 Issue:18 Volume:30 Page:e4522
ISSN:1532-0626
Container-title:Concurrency and Computation: Practice and Experience
language:en
Short-container-title:Concurrency Computat Pract Exper

Author:

Zhou Wei¹^ORCID,Cai Zhanxiu²,Lian Bo²,Wang Jincai³,Ma Jianping⁴,Sun Bin¹,Yu Qian¹

Affiliation:

1. Network Information Center; Weifang Medical University; Weifang China

2. School of Bioscience and Technology; Weifang Medical University; Weifang China

3. Computer Staff Room; Weifang Medical University; Weifang China

4. Division of Human Resources; Weifang Medical University; Weifang China

Funder

Natural Science Foundation of Shandong Province

Publisher

Wiley

Subject

Computational Theory and Mathematics,Computer Networks and Communications,Computer Science Applications,Theoretical Computer Science,Software

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/cpe.4522/fullpdf

Reference31 articles.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Res,1997

2. Rapid and sensitive sequence comparison with FASTP and FASTA;Pearson;Methods Enzymol,1990

3. Identification of common molecular subsequences;Smith;J Mol Biol,1980

4. A general method applicable to search for similarities in amino acid sequence of 2 proteins;Needleman;J Mol Biol,1970

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. ESA: An efficient sequence alignment algorithm for biological database search on Sunway TaihuLight;Parallel Computing;2023-09

2. A novel parallel Markov clustering method in biological interaction network analysis under multi-GPU computing environment;The Journal of Supercomputing;2020-02-07

3. Implementation of Hybrid Alignment Algorithm for Protein Database Search on the SW26010 Many-Core Processor;IEEE Access;2019

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