Integrative modeling of protein‐protein interactions with pyDock for the new docking challenges-Reference-Cited by-同舟云学术

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Integrative modeling of protein‐protein interactions with pyDock for the new docking challenges

Published:2019-11-30 Issue:8 Volume:88 Page:999-1008
ISSN:0887-3585
Container-title:Proteins: Structure, Function, and Bioinformatics
language:en
Short-container-title:Proteins

Author:

Rosell Mireia¹²,Rodríguez‐Lumbreras Luis A.¹²,Romero‐Durana Miguel¹²³,Jiménez‐García Brian¹,Díaz Lucía¹^ORCID,Fernández‐Recio Juan¹²³^ORCID

Affiliation:

1. Barcelona Supercomputing Center (BSC) Barcelona Spain

2. Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja) Logroño Spain

3. Structural Biology Unit, Instituto de Biología Molecular de Barcelona (IBMB‐CSIC) Barcelona Spain

Funder

European Regional Development Fund

Publisher

Wiley

Subject

Molecular Biology,Biochemistry,Structural Biology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.25858

Reference51 articles.

1. An empirical framework for binary interactome mapping

2. Estimating the size of the human interactome

3. Assessment of blind predictions of protein-protein interactions: Current status of docking methods

4. Docking and scoring protein complexes: CAPRI 3rd Edition

5. The challenge of modeling protein assemblies: the CASP12-CAPRI experiment

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1. pyDockDNA: A new web server for energy-based protein-DNA docking and scoring;Frontiers in Molecular Biosciences;2022-10-06

2. Molecular dynamics simulations highlight the altered binding landscape at the spike-ACE2 interface between the Delta and Omicron variants compared to the SARS-CoV-2 original strain;Computers in Biology and Medicine;2022-10

3. In-Silico Characterization of von Willebrand Factor Bound to FVIII;Applied Sciences;2022-08-04

4. Information-driven modeling of biomolecular complexes;Current Opinion in Structural Biology;2021-10

5. Docking approaches for modeling multi-molecular assemblies;Current Opinion in Structural Biology;2020-10

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