Contaminations in (meta)genome data: An open issue for the scientific community-Reference-Cited by-同舟云学术

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Contaminations in (meta)genome data: An open issue for the scientific community

Published:2019-12-23 Issue:4 Volume:72 Page:698-705
ISSN:1521-6543
Container-title:IUBMB Life
language:en
Short-container-title:IUBMB Life

Author:

De Simone Giovanna¹,Pasquadibisceglie Andrea¹,Proietto Roberta¹,Polticelli Fabio¹,Aime Silvio²,J.M. Op den Camp Huub³,Ascenzi Paolo⁴^ORCID

Affiliation:

1. Department of SciencesRoma Tre University Roma Italy

2. Department of Molecular Biotechnology and Health SciencesUniversity of Torino Torino Italy

3. Department of MicrobiologyIWWR, Radboud University, Heyendaalseweg 135 Nijmegen AJ The Netherlands

4. Interdepartmental Laboratory for Electron MicroscopyRoma Tre University Roma Italy

Publisher

Wiley

Subject

Cell Biology,Clinical Biochemistry,Genetics,Molecular Biology,Biochemistry

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1002/iub.2216

Reference68 articles.

1. Correcting for Sample Contamination in Genotype Calling of DNA Sequence Data

2. Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions

3. Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

4. Conpair: concordance and contamination estimator for matched tumor–normal pairs

5. Parasite infection of public databases: a data mining approach to identify apicomplexan contaminations in animal genome and transcriptome assemblies

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4. Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host;BMC Genomics;2023-09-18

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