Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM
Author:
Affiliation:
1. Arizona State University, Phoenix, AZ, USA
2. University of Central Florida, Orlando, FL, USA
Funder
National Science Foundation
Publisher
ACM
Link
https://dl.acm.org/doi/pdf/10.1145/3386263.3407590
Reference31 articles.
1. A survey of sequence alignment algorithms for next-generation sequencing
2. H. Li and R. Durbin "Fast and accurate short read alignment with burrows--wheeler transform " bioinformatics vol. 25 pp. 1754--1760 2009. H. Li and R. Durbin "Fast and accurate short read alignment with burrows--wheeler transform " bioinformatics vol. 25 pp. 1754--1760 2009.
3. AligneR: A Process-in-Memory Architecture for Short Read Alignment in ReRAMs
4. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
5. SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
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1. Invited: Accelerating Genome Analysis via Algorithm-Architecture Co-Design;2023 60th ACM/IEEE Design Automation Conference (DAC);2023-07-09
2. Aligner-D: Leveraging In-DRAM Computing to Accelerate DNA Short Read Alignment;IEEE Journal on Emerging and Selected Topics in Circuits and Systems;2023-03
3. RawHash: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large Genomes;2023-01-23
4. Emerging Memory Structures for VLSI Circuits;Wiley Encyclopedia of Electrical and Electronics Engineering;2022-05-12
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