AnySeq/GPU-Reference-Cited by-同舟云学术

AnySeq/GPU

Published:2022-06-28 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 36th ACM International Conference on Supercomputing
language:
Short-container-title:

Author:

Müller André¹,Schmidt Bertil¹,Membarth Richard²,Leißa Roland³,Hack Sebastian⁴

Affiliation:

1. Johannes Gutenberg University, Mainz, Germany

2. Research Institute AImotion Bavaria, Ingolstadt, Germany

3. University of Mannheim, Mannheim, Germany

4. Saarland University, Saarbrücken, Germany

Funder

Bundesministerium für Bildung und Forschung

Publisher

ACM

Link

https://dl.acm.org/doi/pdf/10.1145/3524059.3532376

Reference31 articles.

1. Nauman Ahmed , Jonathan Lévy , Shanshan Ren , Hamid Mushtaq , Koen Bertels , and Zaid Al-Ars . 2019. GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC bioinformatics 20, 1 ( 2019 ), 1--20. Nauman Ahmed, Jonathan Lévy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, and Zaid Al-Ars. 2019. GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC bioinformatics 20, 1 (2019), 1--20.

2. Muaaz G Awan , Jack Deslippe , Aydin Buluc , Oguz Selvitopi , Steven Hofmeyr , Leonid Oliker , and Katherine Yelick . 2020. ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC bioinformatics 21, 1 ( 2020 ), 1--29. Muaaz G Awan, Jack Deslippe, Aydin Buluc, Oguz Selvitopi, Steven Hofmeyr, Leonid Oliker, and Katherine Yelick. 2020. ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC bioinformatics 21, 1 (2020), 1--29.

3. Scrapping your inefficient engine

4. Finally Tagless, Partially Evaluated

5. Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments

Cited by 5 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. iPuma: High-Performance Sequence Alignment on the Graphcore IPU;ISC High Performance 2024 Research Paper Proceedings (39th International Conference);2024-05

2. RabbitSAlign: Accelerating Short-Read Alignment for CPU-GPU Heterogeneous Platforms;Lecture Notes in Computer Science;2024

3. Dedicated Bioinformatics Analysis Hardware;Reference Module in Life Sciences;2024

4. Space Efficient Sequence Alignment for SRAM-Based Computing: X-Drop on the Graphcore IPU;Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis;2023-11-11

5. Accelerating BWA-MEM Read Mapping on GPUs;Proceedings of the 37th International Conference on Supercomputing;2023-06-21